BtaEX0024157 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006907 | NEB
Description
nebulin [Source:HGNC Symbol;Acc:HGNC:7720]
Coordinates
chr2:44720135-44725052:+
Coord C1 exon
chr2:44720135-44720239
Coord A exon
chr2:44721565-44721669
Coord C2 exon
chr2:44724942-44725052
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTGTCTTGCTGGCACTCTAGGTG
3' ss Score
7.68
5' ss Seq
GATGTAAGA
5' ss Score
5.46
Exon sequences
Seq C1 exon
GTGGAGTACAGAGCCAAGCACCGCAAGGAAGGCAGCCACGGACTTAGCATGCTTGGTCGCCCCGACATTGAAATGGCCAAGAAGGCAGCCAAGCTGAGCAGCCAG
Seq A exon
GTGGAATACATCAAAGGCCAAAGGAGAGGGCACGGGCACGGCGCCGCATCTTATGACACCCCTATGATGAGGCAGCTTAAGAAAACTAATGTGCTCATCAGTGAT
Seq C2 exon
GTTCAATACCGAGAAAATTTCAACAAAGAGAAGGGCAAGACACCAAAATACAATCCAAAAGATAGCCAGCTCTACAAAGTCATGAAAGATGCTAATACTCTTGCAAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006907_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.729 A=0.629 C2=0.649
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(33.3=25.7),PF0088013=Nebulin=PU(55.2=45.7)
A:
PF0088013=Nebulin=PU(55.2=45.7)
C2:
PF0088013=Nebulin=PD(37.9=29.7)
Main Inclusion Isoform:
ENSBTAT00000061000fB4654
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGTACAGAGCCAAGCAC
R:
TCACTTGCAAGAGTATTAGCATCT
Band lengths:
215-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development