GgaEX0018894 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F6U7Z0]
Coordinates
chr7:34700791-34704936:-
Coord C1 exon
chr7:34704838-34704936
Coord A exon
chr7:34703477-34703575
Coord C2 exon
chr7:34700791-34700901
Length
99 bp
Sequences
Splice sites
3' ss Seq
TCTCTTGCTACGCGTTATAGGCG
3' ss Score
5.25
5' ss Seq
CATGTAAGA
5' ss Score
5.58
Exon sequences
Seq C1 exon
ATTGAATATAAAAAGCGTGGAGAAGCTGGCCTGGGTGTAACCATGCTGGGACGTCCAGATATTGAGCTGGCAAAGGAAGTGTCCAAGCTAACCAGTCAG
Seq A exon
GCGGAATACCTGAAGCGGCATATGAGAGGGCACGGAGCTGCATCTTATGATACACCATGGATGAGAACGTTTAAGAAAGCTAATATGCTAAGTAGTCAT
Seq C2 exon
GTGAAGTACAAGGAGAACTTTTCCAAAGAGAAGGGCAAAAAGCCAAAGTATGATTTAAAGGAGGCTAAAATCTACAAGACCATGAAAGATGCTCACAACATAGCTAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495_MULTIEX1-13/33=12-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.182 C2=0.093
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=33.3),PF0088013=Nebulin=PU(55.2=48.5)
A:
PF0088013=Nebulin=PU(55.2=48.5)
C2:
PF0088013=Nebulin=PD(37.9=29.7)
Main Inclusion Isoform:
ENSGALT00000020417fB2250
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTAACCATGCTGGGACGTC
R:
CTCACTAGCTATGTTGTGAGCA
Band lengths:
176-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]