BtaEX0024336 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008921 | NEXN
Description
nexilin (F actin binding protein) [Source:HGNC Symbol;Acc:HGNC:29557]
Coordinates
chr3:67003833-67019517:-
Coord C1 exon
chr3:67019329-67019517
Coord A exon
chr3:67011126-67011323
Coord C2 exon
chr3:67003833-67004054
Length
198 bp
Sequences
Splice sites
3' ss Seq
AAAAGAATTATTTTAAATAGGTA
3' ss Score
3.68
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GTAAATGAAGAGGAGGAAAACCAAGACACAGAAAACATTTTTAAAGGGTACCGCCCTGGTAAACTCAAGCTCAGTTTTGAAGAAATAGAAAGACAAAGGAGAGAAGATGAAAAAAGGAAAGCAGAAGAAGATGCCAGAAGAAGAATAGAGGAAGAAAAGAAGGCATTCGCTGAAGCAAGGAGAAGCATG
Seq A exon
GTAGTAGATGATGACACCCCAGAGATGTATAAAACAATCTCTCAAGAATCTCTTATACCGGGAAAACTGGAAATTAATTTTGAAGAATTATTAAAACAAAAAATGGAAGAAGAAAGACGACGAACAGAGGAGGAGCGGAAACATAAACTAGAGATGGAAAAACAGGAATTTGAACAACTGAGACAAGAAATGGGAGAG
Seq C2 exon
GAAGAGGAAGAAAATGAAACCTTTGAACTGAGCAGGGAATATGAAGAATTAATCAAATTGAAAAGGAGTGGTTCTATTCAAGCTAAAAATTTAAAAAGCAAGTTTGAAAAAATTGGACAATTGTCTGAAAAAGAAATTCAGAAAAAGATAGAAGAAGAACGAGCACGAAGAAGAGCAATTGACCTTGAAATTAAAGAGAGAGAAGCAGAAAACTTTCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008921-'11-17,'11-15,12-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=0.773 C2=0.392
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAAGCAGAAGAAGATGCCA
R:
TGCTCTTCTTCGTGCTCGTTC
Band lengths:
252-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development