GgaEX0013103 @ galGal3
Exon Skipping
Gene
ENSGALG00000008945 | NEXN
Description
NA
Coordinates
chr8:19620790-19626511:-
Coord C1 exon
chr8:19626326-19626511
Coord A exon
chr8:19622117-19622317
Coord C2 exon
chr8:19620790-19621011
Length
201 bp
Sequences
Splice sites
3' ss Seq
ACGATCTGCATTTCCAGCAGGTG
3' ss Score
7.09
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
Exon sequences
Seq C1 exon
ATAAATGAAGGTGGCCATGAAGAATCTGAAAATTCTGGTAGAGAATTCCGTCCTGGTAAACTTAGGCTCAGTTTTGAGGAGATGGAAAGACTGAGGAGAGAAGAGGAAAAGAGGAGAGCAGAACAAGATGCAAGAAGACGCATAGAAGAAGAGAGAAGGGCGTTTGCTGAAGCACGGAAGAACATG
Seq A exon
GTGCTGGATGATGATGAATCACCGGAAATGTTTAAAACATTTTCTCAAGAATCTCTCATCCCTGGTAAACTGGAAATTAATTTTGAGGAGATGCTGAGACAAAAGATGGAAGAAGAAAAGAGACGCACGGAAGAGGAGCGTAGGCAAAAGTTGGAAATGGAAAAGCAAGAATTCCAACAACTAAGACAAGAAATGGGAGAG
Seq C2 exon
CTGGAAGAGGAGTCTGAAACTTTTGAGCTAAGCAAAGAATATGAAGAATTAATAAAGCTAAAAAGAAGTGGTTCTATTCAAGCGAAGAATCTGAAAAGCAAGTTTGAGAAGATAGGACAATTGTCTCAAGAAGAAATACAAAAGAAGATTGAAGAAGAACGAGCCAAAAGAAGAGCAATGGATGAAGAAATAAGAGAAAGGGAAGCTGAGAAGTTTCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008945-'7-12,'7-11,8-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.823 A=0.896 C2=0.541
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGAGATGGAAAGACTGAGGA
R:
CCATTGCTCTTCTTTTGGCTCG
Band lengths:
293-494
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]