DreEX6049223 @ danRer10
Exon Skipping
Gene
ENSDARG00000057317 | nexn
Description
nexilin (F actin binding protein) [Source:ZFIN;Acc:ZDB-GENE-041114-92]
Coordinates
chr8:18483489-18486445:-
Coord C1 exon
chr8:18486398-18486445
Coord A exon
chr8:18483792-18483986
Coord C2 exon
chr8:18483489-18483710
Length
195 bp
Sequences
Splice sites
3' ss Seq
AGTGTGTCTTGTTCTTATAGGTG
3' ss Score
10.43
5' ss Seq
GAGGTCAGC
5' ss Score
5.66
Exon sequences
Seq C1 exon
AGCCCTGGAGTGGATCAGGATAATATGACTGGATGTGGAGATAAAGAA
Seq A exon
GTGCTGGATGAGGATGAAACTCTGGTGCGCACGGAGTCACAGGAAGGATTGCACCCAGGAAAGCTTGAGATCAACTTTGAGGAGATGCTGAAGATGAAGGAGGAGACAGAGCGCAAGCGCAAGCAGGAGGCCAGACGGCAGAAAATGGAGATGGAGAAGAAAGAGTTTGAACAGTTGAGACAAGAGATGGGCGAG
Seq C2 exon
GAGGAGATTAATGAAAGCTCTGAGGTGGTGAGCGCAGAGTACGAGGAGCTAACCAAGTTAAAGCGAACTGGCTCCATCCAGGCCAAAAGCCTGAAATCCAAATTTGAGAAGATCAAGCAGCTCACAGAGGAGGAGATCCAGAAAAAGATCGAAGAGGAGCGAGCAAGACGGAAAGAAATTGATGAGCAAATCAAGGAGAGAGAGGCTGAGCGCTGTCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057317-'17-22,'17-21,18-22=AN
Average complexity
A_C2
Mappability confidence:
100%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.757
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGGAGTGGATCAGGATA
R:
GCTCAGCCTCTCTCTCCTTGA
Band lengths:
258-453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]