RnoEX6011954 @ rn6
Exon Skipping
Gene
ENSRNOG00000012512 | Nexn
Description
nexilin (F actin binding protein) [Source:RGD Symbol;Acc:708354]
Coordinates
chr2:257459921-257465160:-
Coord C1 exon
chr2:257464972-257465160
Coord A exon
chr2:257461130-257461327
Coord C2 exon
chr2:257459921-257460142
Length
198 bp
Sequences
Splice sites
3' ss Seq
TAAATATTTATTTTAAATAGGTA
3' ss Score
7.52
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GTAAACGAGGAGGATGAAAGCCAAGACACAGAAACGGTTTTTAAAGAGTACCGCCCAGGAAAACTCCGACTCAGTTTTGAGGAAATAGAAAGGCAAAGGAGAGAAGAGGAAAAACGAAAGGCCGAGGAGGAGGCGCGAAGGAGGATGGAGGAGGAGAAGAAGGCATTTGCTGAAGCCAGGAGAAGCATG
Seq A exon
GTATTAGATGATGATTCCCCAGAGATTTATAAAGCAGTCTCTCAAGAATCTCTAACGCCTGGAAAACTGGAAATTAATTTTGAACAATTATTAAGACAAAAAATGGAAGAAGAAAGACGACGAACAGAGGAAGAACGGAGGCAAAAACTAGAAATGGAGAAACAGGAATTTGAACAACTGAGACAAGAAATGGGAAAG
Seq C2 exon
GAAGAAGAAGAAAATGAAAGCTTTGGGTTGAGTAGAGAATATGAAGAATTAATTAAATTAAAAAGGAGTGGTTCAATTCAAGCCAAAAATCTAAAAAGCAAGTTTGAAAAAATTGGACAGTTGTCTGAAAAAGAAGTACAGAAAAAGATAGAAGAAGAGAGAGCAAAAAGGAGAGCAATTGACCTTGAAATTAAAGAGCGAGAAGCAGAAAACTTCCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012512-'22-22,'22-20,24-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.762 A=0.848 C2=0.427
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000083344fB9579
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCTGAAGCCAGGAGAAGC
R:
TGGAAGTTTTCTGCTTCTCGCT
Band lengths:
242-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]