BtaEX0024486 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007244 | NID1
Description
nidogen 1 [Source:HGNC Symbol;Acc:HGNC:7821]
Coordinates
chr28:8762587-8776576:-
Coord C1 exon
chr28:8776433-8776576
Coord A exon
chr28:8769120-8769245
Coord C2 exon
chr28:8762587-8762736
Length
126 bp
Sequences
Splice sites
3' ss Seq
AAAACAAAATTTTGCTTTAGATA
3' ss Score
5.46
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
ATGGCTCCCCTGATGCCCTTCAGAATCCTTGCTACATTGGCAGTCATGGGTGTGACTCCAATGCGGCCTGTCGCCCTGGCCCAGGGACCCAGTTCACCTGCGAGTGCTCCATCGGCTTCCGAGGAGACGGACGGACCTGCTATG
Seq A exon
ATATCGACGAATGTTCAGAGCAGCCCTCAGTGTGTGGCAATCACGCGATCTGCAATAACCACCCAGGAACCTTCCGCTGTGAGTGTGTGGAGGGCTACCAGTTTTCAGAGGCTGGAACATGTGTGG
Seq C2 exon
CTGCCGTGGGCCTGCGCCCCGTCAACCACTGCGAGACTGGCCTTCACGACTGTGACATCCCCCAGCGGGCCCGGTGCATCTACATGGGCGGCTCCTCCTACACCTGCTCCTGCCTCCCAGGCTTCTCTGGGGATGGCCGAGCCTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007244-'20-23,'20-22,24-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=WD(100=75.5),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3)
C2:
PF126622=cEGF=PU(81.8=35.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCTGATGCCCTTCAGAAT
R:
CAGGAGCAGGTGTAGGAGGAG
Band lengths:
251-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development