RnoEX0059787 @ rn6
Exon Skipping
Gene
ENSRNOG00000002461 | Nid1
Description
nidogen 1 [Source:RGD Symbol;Acc:3178]
Coordinates
chr17:90576458-90584112:-
Coord C1 exon
chr17:90583969-90584112
Coord A exon
chr17:90578604-90578729
Coord C2 exon
chr17:90576458-90576607
Length
126 bp
Sequences
Splice sites
3' ss Seq
TAAATCAACAATTGCTACAGATA
3' ss Score
2.89
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
ATGGCTCCCCTGATGCCCTTCAGAATCCATGCTACATCGGCACCCATGGGTGTGACAGCAATGCAGCCTGTCGCCCTGGCCCTGGAACACAGTTCACCTGTGAATGCTCTGTCGGCTTCCGAGGAGACGGGAAGGCTTGCTACG
Seq A exon
ATATTGATGAATGTTCAGAGCAGCCTTCCCGGTGTGGGAACCATGCAATCTGCAACAACCACCCAGGGACCTTCCGCTGTGAGTGCATGGAGGGCTACCACTTCTCAGACAGGGGAATATGTGTGG
Seq C2 exon
CTGCTGTGGACCAACGTCCCATCAACTACTGTGAAACTGGTCTCCACAACTGTGATATCCCTCAGCGAGCCCAGTGCATCTATATGGGTGGCTCCTCCTACACCTGTTCCTGTCTGCCTGGCTTCTCTGGGGATGGCAGAGCCTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002461-'15-12,'15-10,17-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=WD(100=75.5),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3)
C2:
PF126622=cEGF=PU(81.8=35.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCTGATGCCCTTCAGAAT
R:
AGGAACAGGTGTAGGAGGAGC
Band lengths:
250-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]