GgaEX1039684 @ galGal4
Exon Skipping
Gene
ENSGALG00000010982 | NID1
Description
nidogen 1 [Source:HGNC Symbol;Acc:HGNC:7821]
Coordinates
chr3:37191734-37195359:+
Coord C1 exon
chr3:37191734-37191877
Coord A exon
chr3:37193363-37193491
Coord C2 exon
chr3:37195216-37195359
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCCTTATTATAATATTCTAGATA
3' ss Score
7.77
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
ATGGTTCTGCTGATATTAGCCGGAATCCTTGCTACACTGGTACCCATAACTGTGACACCAATGCAGTATGTCGTGCAGGAACTGGGAATCGTTTCTCTTGTGAATGTTCGATTGGATTCCGTGGAGATGGAAACGTTTGTTATG
Seq A exon
ATATTGATGAGTGTTCAGAGCAACCGGGTCTATGTGGCAGCAATGCAGTTTGCAATAACCAGCCGGGAACGTACCGATGTGAGTGTGTTGACGGATACCAGTTTGCAGCAGACGGGCGGACTTGTGTTG
Seq C2 exon
CTGTTGAATATGCCATAAACCACTGCCAGACAGGCACACATGGCTGCGACATCCCTCAGCGGGCTCAGTGCGTGTACACTGGTGGGTCTGCCTACATCTGCACATGCCTCCCTGGCTTCTCTGGAGATGGGCGTGCCTGTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010982-'22-25,'22-22,24-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=WD(100=75.5),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.5)
C2:
PF126622=cEGF=PU(81.8=36.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGAATCCTTGCTACACTGG
R:
CATCTCCAGAGAAGCCAGGGA
Band lengths:
254-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]