MmuEX6057311 @ mm9
Exon Skipping
Gene
ENSMUSG00000005397 | Nid1
Description
nidogen 1 [Source:MGI Symbol;Acc:MGI:97342]
Coordinates
chr13:13575917-13581422:+
Coord C1 exon
chr13:13575917-13576060
Coord A exon
chr13:13578906-13579031
Coord C2 exon
chr13:13581273-13581422
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTATCGACAACTTACTGCAGATA
3' ss Score
3.77
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
ATGGCTCCCCTGATGCCCTTCAGAATCCATGCTACATTGGCACCCATGGGTGTGACAGCAATGCTGCCTGTCGCCCTGGCCCTGGAACACAGTTCACCTGCGAATGCTCCATCGGCTTCCGAGGAGACGGGCAGACTTGCTATG
Seq A exon
ATATTGATGAGTGTTCAGAGCAGCCTTCCCGCTGTGGGAACCATGCGGTCTGCAACAACCTCCCAGGAACCTTCCGCTGCGAGTGTGTAGAGGGCTACCACTTCTCAGACAGGGGAACATGTGTGG
Seq C2 exon
CTGCCGAGGACCAACGTCCCATCAACTACTGTGAAACTGGTCTCCACAACTGTGATATCCCCCAGCGAGCCCAGTGCATCTATATGGGTGGTTCCTCCTACACCTGCTCCTGTCTGCCTGGCTTCTCTGGGGATGGCAGAGCCTGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005397-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=WD(100=75.5),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3)
C2:
PF126622=cEGF=PU(81.8=35.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCTGATGCCCTTCAGAAT
R:
AGGAGCAGGTGTAGGAGGAAC
Band lengths:
250-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: