BtaEX0024888 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009265 | NR5A2
Description
nuclear receptor subfamily 5, group A, member 2 [Source:HGNC Symbol;Acc:HGNC:7984]
Coordinates
chr16:80751686-80767506:+
Coord C1 exon
chr16:80751686-80751749
Coord A exon
chr16:80763287-80763424
Coord C2 exon
chr16:80767388-80767506
Length
138 bp
Sequences
Splice sites
3' ss Seq
GCCGTGCCGCCCGCATTCAGGTG
3' ss Score
8.82
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
ATGTCTTCTAATTCGGATACTGGGGATTTACAAGAATCTCTAAAGCACGGACTTACACCTATTG
Seq A exon
GTGCAAGGCTTCCGGACGGACACGGACCCCTTGCCCCCGCCCGCGGCCGCCTTGTCATGCTGCCCAAAGTGGAGACGGAAGCCCTGGGACTGGCTCGGTCGCATGGGGACCAGGGGCAGATGCCGGAAAACATGCAAG
Seq C2 exon
TGTCCCCGTTTAAAATGGTGAATTACTCCTATGATGAAGATCTTGAGGAGCTCTGTCCGGTGTGCGGAGACAAAGTGTCTGGGTACCATTACGGGCTCCTCACCTGTGAAAGCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009265_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.660 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0010513=zf-C4=PU(32.9=57.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCTTCTAATTCGGATACTGGGG
R:
AGCTTTCACAGGTGAGGAGCC
Band lengths:
178-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development