RnoEX6044420 @ rn6
Exon Skipping
Gene
ENSRNOG00000000653 | Nr5a2
Description
nuclear receptor subfamily 5, group A, member 2 [Source:RGD Symbol;Acc:68353]
Coordinates
chr13:53855524-53862514:-
Coord C1 exon
chr13:53862452-53862514
Coord A exon
chr13:53859265-53859402
Coord C2 exon
chr13:53855524-53855642
Length
138 bp
Sequences
Splice sites
3' ss Seq
TCTGTGCTGCCCGTGTTCAGGTG
3' ss Score
10.6
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CACCTGCACCAGGATCAGAGACTCCACACTCCCCCAAACTTGAGGAAAAACACCGGGAAAAAC
Seq A exon
GTGCTGGGCTTCCGGACCGACACCGACGCCCCATTCCCGCCCGCAGCCGCCTTGTCATGCTGCCCAAAGTGGAGACGGAAGCCTCAGGACTGGTCCGATCGCATGGGGAACAGGGGCAGATGCCGGAAAACATGCAAG
Seq C2 exon
TGTCTCAATTTAAAATGGTGAATTACTCCTATGATGAAGATCTGGAAGAGCTGTGTCCTGTGTGTGGCGATAAAGTATCTGGGTATCATTACGGTCTCCTCACCTGTGAAAGCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000653-'3-3,'3-2,6-3=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.809 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0010513=zf-C4=PU(32.9=57.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACCAGGATCAGAGACTCC
R:
TTTCACAGGTGAGGAGACCGT
Band lengths:
170-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]