MmuEX6027819 @ mm10
Exon Skipping
Gene
ENSMUSG00000026398 | Nr5a2
Description
nuclear receptor subfamily 5, group A, member 2 [Source:MGI Symbol;Acc:MGI:1346834]
Coordinates
chr1:136944959-136952164:-
Coord C1 exon
chr1:136952102-136952164
Coord A exon
chr1:136948722-136948859
Coord C2 exon
chr1:136944959-136945077
Length
138 bp
Sequences
Splice sites
3' ss Seq
TCTCTGCTGCCCGTGTCCAGGTG
3' ss Score
10.34
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CGTCTGCACCAGGGTCAGAGACTCGCCACTCCCCCAAACGTGAGGAACAACTCCGGGAAAAAC
Seq A exon
GTGCTGGGCTTCCGGACCGACACCGACGCCCCATTCCCGCCCGCAGCCGCCTTGTCATGCTGCCCAAAGTGGAGACGGAAGCCCCAGGACTGGTCCGATCGCATGGGGAACAGGGGCAGATGCCAGAAAACATGCAAG
Seq C2 exon
TGTCTCAATTTAAAATGGTGAATTACTCCTATGATGAAGATCTGGAAGAGCTATGTCCTGTGTGTGGCGATAAAGTGTCTGGGTACCATTACGGTCTCCTCACGTGCGAAAGCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026398-'6-7,'6-5,9-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.698 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0010513=zf-C4=PU(32.9=57.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCACCAGGGTCAGAGACTC
R:
CTTGCAGCTTTCGCACGTGAG
Band lengths:
179-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types