GgaEX1040306 @ galGal4
Exon Skipping
Gene
ENSGALG00000002182 | NR5A2
Description
nuclear receptor subfamily 5 group A member 2 [Source:RefSeq peptide;Acc:NP_990409]
Coordinates
chr8:1657875-1668861:-
Coord C1 exon
chr8:1668556-1668861
Coord A exon
chr8:1660144-1660281
Coord C2 exon
chr8:1657875-1657993
Length
138 bp
Sequences
Splice sites
3' ss Seq
ACCTGTGCTGCCGTGTCCAGGTG
3' ss Score
10.89
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
AAATGGGATACATGGTTTACAGCAGGTCACTAATGCTGGAAAAAGTACAGAGTCCACCGAAAGACATGCTTGTTACTTTCTGAATTCTGGGATAATTTTTTTGTTGTTGTTCATCACTCCGACTTTCACTGAGGGTTATTATAGCCTTGGTCTCAAGGCCAGAAAAGTTTACAGGCTGCACCTCTTCCGTACTCAATGCTGTACACCTTGCACCCAAGGGTACTGTATATTTACACTCAATAATGTCTTCTGGTTCTCACACGGCCATCATACAGGAATCTATAAAACATGGACTTACATCAGTCG
Seq A exon
GTGCCGGTGCCGCGGACGGACACGGAGCCCCCAGCCCGGCCCGCAGCCGCCTTGTCATGCTGCCCAAAGTGGAGACGGAGGCCCTGGGACTCGCCCGGTCGAATGGGGAACAGGGGCAGATGCCAGAAAACATGCAAG
Seq C2 exon
TGTCTCAGTTTAAAATGGTGAATTACTCCTACGACGAAGACCTGGAGGAGCTGTGTCCGGTGTGCGGAGATAAGGTGTCGGGGTACCACTACGGGCTGCTCACCTGCGAGAGCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002182_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.681 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0010513=zf-C4=PU(32.9=57.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCGACTTTCACTGAGGGT
R:
ACACAGCTCCTCCAGGTCTTC
Band lengths:
247-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]