BtaEX0024896 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019327 | NRAP
Description
nebulin-related anchoring protein [Source:HGNC Symbol;Acc:HGNC:7988]
Coordinates
chr26:34363532-34367377:-
Coord C1 exon
chr26:34367273-34367377
Coord A exon
chr26:34366068-34366175
Coord C2 exon
chr26:34363532-34363729
Length
108 bp
Sequences
Splice sites
3' ss Seq
GGTGCCCATCTTCTCAACAGACA
3' ss Score
7.41
5' ss Seq
GATGTGAGC
5' ss Score
4.72
Exon sequences
Seq C1 exon
AGGTTGTACCGAGAGCAAGGAGAAAACCTAAAGCATCACTACACGCAGACCACTGACCTCCCTGAAGTCCTGCTGGCCAAGCTGAATGCCATGAATATCAGCGAG
Seq A exon
ACACGTTATAAGGAATCCTGGAGCAAACTTCGAGACGGTGGCTATAAGCTGAGACTGGATGCCATTCCATTCCAGGCAGCAAAGGCTTCTGGCGAAATCATAAGTGAT
Seq C2 exon
GTGAATTACAAGAAAGACTTTGAACACTCAAAGGCGCAGTTCCATCTGCCGTTGGACATGGTAACCCTGGTGCATGCCAAGAAGGCTCAGACCCTGGCCAGCGACCAGGACTACAGACACCCGCTCCCCCAGTACACGTCCTTGGCTGAGGACCTGAGGCTCAGCTGCGCCAAGAGAGCTCACAAGTTGCAGAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019327_MULTIEX1-4/16=3-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=0.000 C2=0.061
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4)
A:
PF0088013=Nebulin=PU(55.2=44.4)
C2:
PF0088013=Nebulin=PD(37.9=16.7),PF0088013=Nebulin=PU(55.2=24.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTACACGCAGACCACTGAC
R:
AACTTGTGAGCTCTCTTGGCG
Band lengths:
257-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development