RnoEX6007855 @ rn6
Exon Skipping
Gene
ENSRNOG00000016714 | Nrap
Description
nebulin-related anchoring protein [Source:RGD Symbol;Acc:1306731]
Coordinates
chr1:277129149-277130756:-
Coord C1 exon
chr1:277130652-277130756
Coord A exon
chr1:277129811-277129918
Coord C2 exon
chr1:277129149-277129262
Length
108 bp
Sequences
Splice sites
3' ss Seq
TGTGCCTTTCTCCCTACCAGACT
3' ss Score
9.54
5' ss Seq
GACGTGAGC
5' ss Score
5.28
Exon sequences
Seq C1 exon
AGACTATACAGGGAGCAAGGAGAGAACTTAAAGCACCATTACACGCAGACTGTAGACTTGCCCGAGGTCCTGCTGGCCAAGCTGAACGCCATGAACATCAGCGAG
Seq A exon
ACTCGCTATAAGGAGTCTTGGAGCCGGCTTCGAGACGGCGGGTATAAGCTGAGGCTGGATGCCCTTCCGTTCCAGGCAGCAAAGGCGTCCAGTGAAGTTATAAGTGAC
Seq C2 exon
TACAAATACAAAGAAGCATTTGAGAGAATGAAAGGGCAGCTGCTCGGCTCCCGGAGCTTGGAAGATGACCTCAGCCTTGCACATTCAGTACACGCGACCTCACTGCAGAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016714-'31-36,'31-35,32-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4)
A:
PF0088013=Nebulin=PU(55.2=44.4)
C2:
PF0088013=Nebulin=PD(37.9=28.9),PF0088013=Nebulin=PU(55.2=42.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTATACAGGGAGCAAGGAGA
R:
CAGTGAGGTCGCGTGTACTGA
Band lengths:
210-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]