MmuEX6033779 @ mm10
Exon Skipping
Gene
ENSMUSG00000049134 | Nrap
Description
nebulin-related anchoring protein [Source:MGI Symbol;Acc:MGI:1098765]
Coordinates
chr19:56344012-56345564:-
Coord C1 exon
chr19:56345460-56345564
Coord A exon
chr19:56344661-56344768
Coord C2 exon
chr19:56344012-56344125
Length
108 bp
Sequences
Splice sites
3' ss Seq
TGGGCCTTTCTCCCTGCCAGACT
3' ss Score
7.47
5' ss Seq
GACGTGAGT
5' ss Score
9.22
Exon sequences
Seq C1 exon
AGACTGTACAGGGAGCAAGGGGAGAATGTGAAGCACCACTACACACAGACTGCAGACTTGCCTGAAGTCCTGCTGGCCAAACTGAACGCCATGAACATCAGCGAG
Seq A exon
ACTCGCTATAAGGAATCTTGGAGCCGGCTTCGAGATGGAGGATACAAGCTGAGGCTGGATGCCCTTCCATTCCAGGCAGCAAAGGCGTCCAGCGAAGTTATAAGTGAC
Seq C2 exon
TACAAATACAAAGAAGCATTTGAGAGAATGAAAGGCCAGATGCTCGGCTCCCGGAGCTTGGAAGATGACCTCAGCCTTGCTCATTCAGTGCACGCGACCTCGCTGCAGAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049134-'31-34,'31-33,32-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4)
A:
PF0088013=Nebulin=PU(55.2=44.4)
C2:
PF0088013=Nebulin=PD(37.9=28.9),PF0088013=Nebulin=PU(55.2=42.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTGTACAGGGAGCAAGGG
R:
ATCACTCTGCAGCGAGGTCG
Band lengths:
219-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types