GgaEX1040314 @ galGal3
Exon Skipping
Gene
ENSGALG00000008914 | NRAP
Description
NA
Coordinates
chr6:28926979-28928088:-
Coord C1 exon
chr6:28927984-28928088
Coord A exon
chr6:28927512-28927619
Coord C2 exon
chr6:28926979-28927092
Length
108 bp
Sequences
Splice sites
3' ss Seq
TCCTCTTCTCTATTTGCTAGATT
3' ss Score
8.07
5' ss Seq
GATGTAGGT
5' ss Score
4.9
Exon sequences
Seq C1 exon
CGGTTGTACAAGGAGCATGGAGAAAGCATAAAGCATCAGTACACACTAACAGCAGATCTTCCTGAAATCCTTCGGGCTAAATTAAACACCATGAATATCAGTGAG
Seq A exon
ATTCGCTATAAGGAGTCCTGGCAAAAGATGAAGGATGGTGGATATCAGCTGAGACTCGATGCCATTCCCTTCCAGGCAGCTAAGGCTTCGGGTGAAATCATAAGCGAT
Seq C2 exon
CACAAGTATAAGGAGGCATTTGAGAAAATGAAAGGGCAGATGATTGGTTCATGTGGCCTGGATGGTGATATTCGTATTGCTCATTCAGTCCATGCGTCATCACTACAGAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008914-'28-27,'28-26,29-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF101574=DUF2365=FE(38.6=100),PF0088013=Nebulin=PU(55.2=45.7)
A:
PF101574=DUF2365=PD(3.4=8.3),PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
C2:
PF0088013=Nebulin=PD(37.9=28.9),PF0088013=Nebulin=PU(53.6=39.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTTGTACAAGGAGCATGGA
R:
TGTAGTGATGACGCATGGACTG
Band lengths:
212-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]