BtaEX0025529 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000987 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
Coordinates
chr15:35409891-35417850:-
Coord C1 exon
chr15:35417731-35417850
Coord A exon
chr15:35412548-35412593
Coord C2 exon
chr15:35409891-35409970
Length
46 bp
Sequences
Splice sites
3' ss Seq
CTCTTCTCCTCTCCCTCTAGGTT
3' ss Score
14.03
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
CCCGGGGCGTCCTGGATCGCAGACTGCACCCGCCACCACTGCAGCAGCACTCCCTTGGGTGCCGTGCTCGTCCGCTCGCCCATCAGCTGCCCGCCGCTCAACGAGACCGAGTGTGCCAAG
Seq A exon
GTTGGGGGCTCAGTGGTACCTTCCTTGGAAGGATGCTGCAGGACAT
Seq C2 exon
GTAAAGAGGATGGGCGCTCCTGCAAGAAGGTGACAATCCGCATGACCATCCGCAAGAATGAATGCAGGAGCAACACCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000987-'59-58,'59-56,60-58
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGATCGCAGACTGCA
R:
TTGTCACCTTCTTGCAGGAGC
Band lengths:
147-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development