GgaEX6037082 @ galGal4
Exon Skipping
Gene
ENSGALG00000006208 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
Coordinates
chr5:11469261-11474956:+
Coord C1 exon
chr5:11469261-11469380
Coord A exon
chr5:11470160-11470205
Coord C2 exon
chr5:11474877-11474956
Length
46 bp
Sequences
Splice sites
3' ss Seq
CTGCCATCTGTCTTGATCAGGTT
3' ss Score
8.93
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
CCTGGTACTACTTGGATTTCAAACTGCATGAGATATGAATGCATACATACAGCAGTCGGATCAGTTCTAGTTGCATCTTCAGTTGGCTGCCCACCCTTTAATGAAACCGAATGTGTAAAG
Seq A exon
GTTGGAGGCTATGTTGTACCATTCCTGGAAGGATGTTGCAAAACAT
Seq C2 exon
GTAAGGAAGATGGAAAATTCTGTAAAAAGGTGACTGTTAGGATGACTATCCGCAAGAATGACTGCAGGAGTAACACACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006208-'68-68,'68-66,69-68=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGCATCTTCAGTTGGCTG
R:
CGGTGTGTTACTCCTGCAGTC
Band lengths:
132-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]