DreEX6006549 @ danRer10
Exon Skipping
Gene
ENSDARG00000068460 | BX842701.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1Q7R5]
Coordinates
chr7:39193185-39199071:-
Coord C1 exon
chr7:39198952-39199071
Coord A exon
chr7:39198677-39198722
Coord C2 exon
chr7:39193185-39193264
Length
46 bp
Sequences
Splice sites
3' ss Seq
AAGTGTTCATCTTGTTGTAGATT
3' ss Score
6.24
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
CCGGGCCGCAGCTGGGTTTCTGACTGCTTGCGCTATGACTGTTCAGACACACTGGCAGGACCTGTGCTTGTCACCCACCCCTACAGCTGCCCACCCTTTAATGAAACTGAATGTATGAAG
Seq A exon
ATTGGGGGCACCATTGTGAGTTATATGGATGGGTGCTGCAAAACAT
Seq C2 exon
GTAAAGAAGATGGGAAATCATGTCAAAAAGTGACAGTGAGGATGACCATTAGAAAGAACGACTGCCGTAGCAACAGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068460-'24-28,'24-26,25-28=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCAGACACACTGGCAGGAC
R:
CGGCAGTCGTTCTTTCTAATGGT
Band lengths:
147-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]