MmuEX0033302 @ mm9
Exon Skipping
Gene
ENSMUSG00000009487 | Otog
Description
otogelin [Source:MGI Symbol;Acc:MGI:1202064]
Coordinates
chr7:53561491-53565224:+
Coord C1 exon
chr7:53561491-53561610
Coord A exon
chr7:53562417-53562462
Coord C2 exon
chr7:53565145-53565224
Length
46 bp
Sequences
Splice sites
3' ss Seq
CTCTCTTTTTCTCCCTCTAGGTT
3' ss Score
14.24
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
CCTGGTGCATCCTGGATCGCGGACTGTGCCCGCCATCACTGTGGCAGCACCCCCCTGGGTGCTGTGCTTGTCCGCTCGCCCATCAGCTGCCCTCCATTCAATGAAACCGAGTGTGCCAAG
Seq A exon
GTTGGTGGCTCTGTGGTACCATCCTTGGAAGGATGCTGCAGAGCAT
Seq C2 exon
GTAAGGAGGATGGACGGTCTTGCAAGAAGGTGACCATTCGCATGACCATCCGCAAGAATGACTGCAGGAGCAATACCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009487_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTGGATCGCGGACTGTG
R:
CTTGCAAGACCGTCCATCCTC
Band lengths:
138-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: