Special

MmuEX0033303 @ mm9

Exon Skipping

Gene
ENSMUSG00000009487 | Otog
Description
otogelin [Source:MGI Symbol;Acc:MGI:1202064]
Coordinates
chr7:53562417-53566804:+
Coord C1 exon
chr7:53562417-53562462
Coord A exon
chr7:53565145-53565224
Coord C2 exon
chr7:53565339-53566804
Length
80 bp
Sequences
Splice sites
3' ss Seq
GCCCACCCTGCCCCTACCAGGTA
3' ss Score
7.83
5' ss Seq
CCTGTGCGT
5' ss Score
4.27
Exon sequences
Seq C1 exon
GTTGGTGGCTCTGTGGTACCATCCTTGGAAGGATGCTGCAGAGCAT
Seq A exon
GTAAGGAGGATGGACGGTCTTGCAAGAAGGTGACCATTCGCATGACCATCCGCAAGAATGACTGCAGGAGCAATACCCCT
Seq C2 exon
GTGAACCTGGTGTCTTGCGATGGGAGGTGCCCTTCTGCCAGCATCTACAACCACAACATCAACACCTATGCCCGCTTCTGCAAGTGCTGCCGTGAGGTGGGACTGCAGCGTCGCTCTGTGCAGCTCTTCTGTGCCACGAATGCTACCTGGGTGCCCTATACAGTACAGGAGCCTACAGACTGTGCCTGCCAGTGGTCCTGAAGCCTGGGTGCCAGGCCTGGCTGGGTCACCCTTGTCACTTTCATGTTCTCCTTCCAGCTAGTCTAGGTGACAAAGGGGAGAGGTTAAAGGTGGGGGATCTTGTTTGTATGTGCACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAATCCACAAGGGACTAGAATAGGCCCCACTTGCCCATCCTGGCTCTCTCTCTCTGAGTCCTTTTACATGCACATAGGAAAGTGCCATTGCTCAGGGCTTTTGGGATCCAACTCTACATGGCTTGAGGTCAGGAGGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009487_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (No Ref, Alt. Stop)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NO

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000130949





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000009631
          









    
Other Skipping Isoforms:
NA
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
chr11:17645564-17645643 
HsaEX6001054
(OTOG)
Human
(hg19)
chr11:17667111-17667190 
HsaEX6001054
(OTOG)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr15:35409891-35409970 
HIGH PSI
BtaEX6058927
(OTOG)
Chicken
(galGal4)
chr5:11474877-11474956 
HIGH PSI
GgaEX6037081
(OTOG)
Chicken
(galGal3)
chr5:13184061-13184140 
HIGH PSI
GgaEX6037081
([1])
Zebrafish
(danRer10)
chr7:39193185-39193264 
HIGH PSI
DreEX6006550
(BX842701.1)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TGGCTCTGTGGTACCATCCTT

				
R: 
CATTCGTGGCACAGAAGAGCT

				
Band lengths: 
183-263

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"