DreEX6006550 @ danRer10
Exon Skipping
Gene
ENSDARG00000068460 | BX842701.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1Q7R5]
Coordinates
chr7:39192029-39198722:-
Coord C1 exon
chr7:39198677-39198722
Coord A exon
chr7:39193185-39193264
Coord C2 exon
chr7:39192029-39193102
Length
80 bp
Sequences
Splice sites
3' ss Seq
ATTCACTTCTGTCGCTGTAGGTA
3' ss Score
8.26
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
ATTGGGGGCACCATTGTGAGTTATATGGATGGGTGCTGCAAAACAT
Seq A exon
GTAAAGAAGATGGGAAATCATGTCAAAAAGTGACAGTGAGGATGACCATTAGAAAGAACGACTGCCGTAGCAACAGACCG
Seq C2 exon
GTCAACATAGTGTCATGTGATGGAAAATGTCCATCTGCGAGTATTTACAACTACAACATCAACACATATGCACGATTTTGTAAGTGTTGTCGAGAGATGGGTCTACAGCGCCGTTCAGTCCAGCTCTACTGCAGTGGAAACTCCACATGGGTCAGTTACACCATACAGGAACCTACGGACTGTTCCTGCCAGTGGTCATAAATCCTAAACCAGAATAACAGAAAGTGTTACTTACCATTCAACTTGAACGTTAAGGACAGCAAGATCTGAGGTTTAAATATAGTGTTATAACTTGTCTGCTTCTTTATTTCACAGAGCAGAATATATATTTTGTCCTTTCAAAATTCTCAAATAACGCCGAAAAATGGAAATAAATTGGTCAGCTGCAAGCAACAGTAGTGAAACTAGTTATGTGCTCATGTTCTGTATATATGGAATCTCATCACTGAGCACACGCTGAAATAAATAAAATTACAACTTGTGTTTAGATGCTTTTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068460-'25-29,'25-28,28-29=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGGGTGCTGCAAAACAT
R:
ACTGACCCATGTGGAGTTTCC
Band lengths:
177-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]