MmuEX0033303 @ mm10
Exon Skipping
Gene
ENSMUSG00000009487 | Otog
Description
otogelin [Source:MGI Symbol;Acc:MGI:1202064]
Coordinates
chr7:46307047-46311434:+
Coord C1 exon
chr7:46307047-46307092
Coord A exon
chr7:46309775-46309854
Coord C2 exon
chr7:46309969-46311434
Length
80 bp
Sequences
Splice sites
3' ss Seq
GCCCACCCTGCCCCTACCAGGTA
3' ss Score
7.83
5' ss Seq
CCTGTGCGT
5' ss Score
4.27
Exon sequences
Seq C1 exon
GTTGGTGGCTCTGTGGTACCATCCTTGGAAGGATGCTGCAGAGCAT
Seq A exon
GTAAGGAGGATGGACGGTCTTGCAAGAAGGTGACCATTCGCATGACCATCCGCAAGAATGACTGCAGGAGCAATACCCCT
Seq C2 exon
GTGAACCTGGTGTCTTGCGATGGGAGGTGCCCTTCTGCCAGCATCTACAACCACAACATCAACACCTATGCCCGCTTCTGCAAGTGCTGCCGTGAGGTGGGACTGCAGCGTCGCTCTGTGCAGCTCTTCTGTGCCACGAATGCTACCTGGGTGCCCTATACAGTACAGGAGCCTACAGACTGTGCCTGCCAGTGGTCCTGAAGCCTGGGTGCCAGGCCTGGCTGGGTCACCCTTGTCACTTTCATGTTCTCCTTCCAGCTAGTCTAGGTGACAAAGGGGAGAGGTTAAAGGTGGGGGATCTTGTTTGTATGTGCACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAATCCACAAGGGACTAGAATAGGCCCCACTTGCCCATCCTGGCTCTCTCTCTCTGAGTCCTTTTACATGCACATAGGAAAGTGCCATTGCTCAGGGCTTTTGGGATCCAACTCTACATGGCTTGAGGTCAGGAGGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009487_MULTIEX1-2/2=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTCTGTGGTACCATCCTT
R:
CATTCGTGGCACAGAAGAGCT
Band lengths:
183-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types