BtaEX6058927 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000987 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
Coordinates
chr15:35409567-35412593:-
Coord C1 exon
chr15:35412548-35412593
Coord A exon
chr15:35409891-35409970
Coord C2 exon
chr15:35409567-35409767
Length
80 bp
Sequences
Splice sites
3' ss Seq
CACTCACCCTGTCCCCGCAGGTA
3' ss Score
12.04
5' ss Seq
CCTGTGCGT
5' ss Score
4.27
Exon sequences
Seq C1 exon
GTTGGGGGCTCAGTGGTACCTTCCTTGGAAGGATGCTGCAGGACAT
Seq A exon
GTAAAGAGGATGGGCGCTCCTGCAAGAAGGTGACAATCCGCATGACCATCCGCAAGAATGAATGCAGGAGCAACACCCCT
Seq C2 exon
GTGAACCTAGTGTCCTGTGATGGGAGGTGCCCGTCTGCCAGCATCTACAACTATAACATCAACACCTACGCCCGCTTCTGCAAGTGCTGCCGTGAGGTGGGCCTGCAGCGGCGCTCCGTGCAGCTCTTCTGTGCCACCAATGCCACCTGGGTGCCCTACACGTTGCAGGAGCCCACCGACTGTGCCTGCCAGTGGTCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000987-'60-59,'60-58,62-59=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTCAGTGGTACCTTCCTT
R:
CATTGGTGGCACAGAAGAGCT
Band lengths:
183-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]