HsaEX6001054 @ hg19
Exon Skipping
Gene
ENSG00000188162 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:8516]
Coordinates
chr11:17665008-17667491:+
Coord C1 exon
chr11:17665008-17665053
Coord A exon
chr11:17667111-17667190
Coord C2 exon
chr11:17667291-17667491
Length
80 bp
Sequences
Splice sites
3' ss Seq
TCATCCCCCTGTCCCCCCAGGTA
3' ss Score
12.02
5' ss Seq
CCTGTGCGT
5' ss Score
4.27
Exon sequences
Seq C1 exon
GTTGGGGGTTCCGTGGTACCTTCCTTGGAAGGATGCTGCAGGACCT
Seq A exon
GTAAGGAGGATGGGCGCTCCTGCAAGAAGGTGACCATCCGCATGACCATCCGCAAGAATGAATGCAGGAGCAGCACCCCT
Seq C2 exon
GTGAACCTAGTGTCCTGCGATGGGAGGTGCCCATCCGCCAGCATCTACAACTACAACATCAACACCTATGCCCGATTCTGCAAGTGCTGCCGTGAGGTGGGCCTGCAGCGGCGCTCTGTGCAGCTCTTCTGTGCCACCAATGCCACCTGGGTGCCCTATACAGTGCAGGAGCCCACCGACTGTGCCTGCCAGTGGTCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188162-'57-62,'57-61,58-62=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGTGGTACCTTCCTTGGAA
R:
CATTGGTGGCACAGAAGAGCT
Band lengths:
179-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)