GgaEX6037081 @ galGal4
Exon Skipping
Gene
ENSGALG00000006208 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
Coordinates
chr5:11470160-11476414:+
Coord C1 exon
chr5:11470160-11470205
Coord A exon
chr5:11474877-11474956
Coord C2 exon
chr5:11476214-11476414
Length
80 bp
Sequences
Splice sites
3' ss Seq
AATCAATGCCCATTTTGCAGGTA
3' ss Score
6.25
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
GTTGGAGGCTATGTTGTACCATTCCTGGAAGGATGTTGCAAAACAT
Seq A exon
GTAAGGAAGATGGAAAATTCTGTAAAAAGGTGACTGTTAGGATGACTATCCGCAAGAATGACTGCAGGAGTAACACACCG
Seq C2 exon
GTGAACATTGTTTCATGTGATGGAAAGTGCCCATCTGCAAGTATATATAACTACAACATCAACACATACGCAAGATTCTGCAAATGCTGCAGGGAGCTTGGACTACAGAGACGAACTGTGCAATTGTATTGCACTAGTAATTCAACCTGGGTCAGCTATTCAATCCAAGAGCCTACAGACTGTTCTTGCCAGTGGTCTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006208-'69-69,'69-68,70-69=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGAGGCTATGTTGTACCA
R:
GCACAGTTCGTCTCTGTAGTCC
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]