GgaEX6037081 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr5:13179344-13185595:+
Coord C1 exon
chr5:13179344-13179389
Coord A exon
chr5:13184061-13184140
Coord C2 exon
chr5:13185398-13185595
Length
80 bp
Sequences
Splice sites
3' ss Seq
AATCAATGCCCATTTTGCAGGTA
3' ss Score
6.25
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
GTTGGAGGCTATGTTGTACCATTCCTGGAAGGATGTTGCAAAACAT
Seq A exon
GTAAGGAAGATGGAAAATTCTGTAAAAAGGTGACTGTTAGGATGACTATCCGCAAGAATGACTGCAGGAGTAACACACCG
Seq C2 exon
GTGAACATTGTTTCATGTGATGGAAAGTGCCCATCTGCAAGTATATATAACTACAACATCAACACATACGCAAGATTCTGCAAATGCTGCAGGGAGCTTGGACTACAGAGACGAACTGTGCAATTGTATTGCACTAGTAATTCAACCTGGGTCAGCTATTCAATCCAAGAGCCTACAGACTGTTCTTGCCAGTGGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006208-'68-71,'68-70,69-71=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGAGGCTATGTTGTACCA
R:
GCACAGTTCGTCTCTGTAGTCC
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]