BtaEX0025594 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004891 | OXNAD1
Description
Bos taurus oxidoreductase NAD-binding domain containing 1 (OXNAD1), mRNA. [Source:RefSeq mRNA;Acc:NM_001035090]
Coordinates
chr1:155035336-155156829:+
Coord C1 exon
chr1:155035336-155035442
Coord A exon
chr1:155047946-155048087
Coord C2 exon
chr1:155156587-155156829
Length
142 bp
Sequences
Splice sites
3' ss Seq
TTATTTGCCTTTCCTTTTAGGGT
3' ss Score
12.78
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTCGTTTCGGCAGCCAAGGTGTGTGGAGTGGCTAGCGAGTCCCCATCGGTGAAGAGGCTCTGCCTGCTCGTCGCCGATAAAGACTTTTCTTTTAAGGCCGGCCAGTG
Seq A exon
GGTTGACTTTTTTATCCCAGGAGTCTCTGTGGTTGGTGGGTTCTCAATATGCTCCAGCCCTAGGCTGCTGGAACAGGAGAGAATGATAGAACTGGCAGTGAAACATGCAAACCACCCTCCTGCTCTCTGGATCCACAATCAG
Seq C2 exon
TGCACCCTGGACTCTGAGGTGGCTGTGAGAGTCGGGGGGGAGTTCTTCTTCGACCCGAAGCCCACGGACGCCTCCAGAAACCTAGTGTTGATCGCGGGAGGTGTTGGGATTAACCCCCTGCTTTCCATCCTGCGGCACGCGGCCGACCTCCTCAGAGAGCGGGCAAGCAAGGGACAGGGGTATGAGATGGGGACAGTCAGACTGCTGTACAGCGCGAAAGACACCAGCGAGCTCCTGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004891-'7-16,'7-9,12-16
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0017516=NAD_binding_1=PU(42.1=63.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTTTAAGGCCGGCCAGTG
R:
GGTGTCTTTCGCGCTGTACAG
Band lengths:
246-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development