GgaEX6019335 @ galGal3
Exon Skipping
Gene
ENSGALG00000011239 | OXNAD1
Description
NA
Coordinates
chr2:34260258-34267254:+
Coord C1 exon
chr2:34260258-34260364
Coord A exon
chr2:34264495-34264636
Coord C2 exon
chr2:34267012-34267254
Length
142 bp
Sequences
Splice sites
3' ss Seq
TGTTTCTGACCAATTTTTAGGGT
3' ss Score
7.54
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GTAATTTCACAAGCCAAAGTGTGTGGCATCACCAATGAATCAGAGACAGTCAAGAGACTACGTTTGGCCATCACAAATAAAGATTTTACTTTCAAAGCGGGACAGTG
Seq A exon
GGTTGATTTCTTTATTCCTGGCGTATCTGTGATTGGGGGATTCTCAATGTGTTCAAGCCCTGGTCTGCTGGAACGAGAAGGAGTGTTAGAGCTTGCAGTGAAGTACACTGACCATCCTCCTGCTCACTGGATCCACACTGAG
Seq C2 exon
TGTACTCTTGACTCAGAAGTGGCTCTGCGAGTGGGAGGTGATTTCTTCTTTGATCCTCAGCCTGGTGACACCCCTGTAAAACTAGTGCTAATAGCAGGGGGTGTTGGAATTAACCCCTTGTTTTCTATACTGCTGCATGTAGCAGATCTTCATGGATACCAAGAGAGTAAAGGAAACGGATACAAAATGGGAACAGTGAAGCTGTACTACAGTGCAAAAAATACAAGTGAACTCTTATTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011239-'7-4,'7-3,8-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0097019=FAD_binding_6=PU(34.8=88.9)
A:
PF0097019=FAD_binding_6=FE(51.1=100)
C2:
PF0097019=FAD_binding_6=PD(12.0=13.6),PF0017516=NAD_binding_1=PU(42.1=63.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTACGTTTGGCCATCACA
R:
CAGCTTCACTGTTCCCATTTTGT
Band lengths:
257-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]