DreEX6072823 @ danRer10
Exon Skipping
Gene
ENSDARG00000062664 | oxnad1
Description
oxidoreductase NAD-binding domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-060503-199]
Coordinates
chr19:20692561-20703805:+
Coord C1 exon
chr19:20692561-20692667
Coord A exon
chr19:20698328-20698469
Coord C2 exon
chr19:20703569-20703805
Length
142 bp
Sequences
Splice sites
3' ss Seq
TCACTTTTTTTTCACATCAGGGT
3' ss Score
8.44
5' ss Seq
GAAGTAAGG
5' ss Score
6.38
Exon sequences
Seq C1 exon
GAACTTTTCTCTGCACGTGTTTGTGACATTATTAGTGAATCTGATACTGTAAAGAGACTAAGACTGGAAGTGGCTCATCCTGACTTCAGCTTCCGTGCTGGACAGTG
Seq A exon
GGTGGATTTCTTCATCCCAGGTGTGGATACTGTGGGCGGTTTCTCCATTTGCTCAAGTCCAGGTCTGCTGAAGAGAGAAGGAGTGATTGAACTGGCTGTAAAATATGCGCGCCATCCTCCAGCACACTGGATTCACACCGAA
Seq C2 exon
TGCTCTGTGGACTCTCAGGTAGCCGTGAGGGTGGGGGGTAATTTCTACTTTGACCCTCAGCCTTCTAACCCTGTGGTGGACCTGTTGCTGGTGGCTGGAGGTGTTGGAATTAACCCTCTATACTCCATCCTGCTACATGCAGCTGATCTGCACAGACACACTCACAGTCACAGATACACACCAGGACACACACACCTGTGTTACAGCGCCAAGAACACTACAGAGCTGCTCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062664-'5-9,'5-5,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0097019=FAD_binding_6=PU(33.7=88.9)
A:
PF0097019=FAD_binding_6=FE(49.5=100)
C2:
PF0097019=FAD_binding_6=PD(14.7=17.7),PF0017516=NAD_binding_1=PU(45.0=62.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCTCATCCTGACTTCAGC
R:
TTCTTGGCGCTGTAACACAGG
Band lengths:
253-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]