MmuEX7005750 @ mm10
Exon Skipping
Gene
ENSMUSG00000021906 | Oxnad1
Description
oxidoreductase NAD-binding domain containing 1 [Source:MGI Symbol;Acc:MGI:1916953]
Coordinates
chr14:32095365-32099631:+
Coord C1 exon
chr14:32095365-32095471
Coord A exon
chr14:32096487-32096628
Coord C2 exon
chr14:32099534-32099631
Length
142 bp
Sequences
Splice sites
3' ss Seq
TGTTCTTCTGTCCCTTTTAGGGT
3' ss Score
13.54
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTCATGGCTGCAGCTAAGGTGTGTGAAATCACTCACGAGTCTCCATCAGTGAAGAGCCTCCGTTTGCTTGTTGCTGATAAAGACTTTTCCTTTAAGGCTGGCCAGTG
Seq A exon
GGTTGATTTCTTCATCCCAGGAGTCTCAGTGGTTGGTGGGTTTTCAATTTGCTCCAGTCCCCAACGGCTAGAACGAGACAGAATAATAGAACTGGCGGTGAAATATGCAGACCACCCTCCTGCTGTCTGGGTTCACAATAAG
Seq C2 exon
ATCTCCACCGGGACCACGCAGACAAAGGACGTAGCTATGAGATAGGGACAGTAAAACTGTTCTACAGTGCAAAGAACACCAGCGAGCTCCTGTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021906-'7-23,'7-15,14-23=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.286
Domain overlap (PFAM):
C1:
PF0097019=FAD_binding_6=PU(37.6=88.9)
A:
PF0097019=FAD_binding_6=FE(55.3=100)
C2:
PF0097019=FAD_binding_6=PD(4.7=26.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATGGCTGCAGCTAAGGTG
R:
TTAAACAGGAGCTCGCTGGTG
Band lengths:
204-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types