BtaEX0025671 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016849 | PABPC1L
Description
poly(A) binding protein, cytoplasmic 1-like [Source:HGNC Symbol;Acc:HGNC:15797]
Coordinates
chr13:74065773-74066950:+
Coord C1 exon
chr13:74065773-74065903
Coord A exon
chr13:74066330-74066407
Coord C2 exon
chr13:74066769-74066950
Length
78 bp
Sequences
Splice sites
3' ss Seq
CCCCGCCATGTACCCTACAGGTA
3' ss Score
9.04
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTGAGCGTCTCTTCCCCCTTGTCTACAACGTCCACGCCCACTTGGCCGGCAAGATCACGGGCATGCTGCTGGAGATTGACAACTCGGAGCTGCTGCTCATGCTGGAGTCCCCAGAGTCCCTCAACGCCAAG
Seq A exon
GTAGAAGAGGCTCTGGCAGTGCTGCAGGCCCACCAGGCCACGGAGCACATGCAAGGAGTGAACCTGTGCTGAGACCAG
Seq C2 exon
AAAATGGAATCCTCACTCCCTTGGCCGAGAAACAGTGTTTCCTGCTCTTGTCTCTAAGGCCCTGTGAGCCGCGACTTCCCAATTGGGGTGTATCTGTACTTGGGCTTTTTGTGGAGTGGAAGGCTGGTCACCCGGCCAACCTCTTGCCTGTTGCTTTATGTATTAAAAGTGCTGCAAACTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016849_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.087 C2=NA
Domain overlap (PFAM):
C1:
PF0065813=PABP=FE(59.7=100)
A:
PF0065813=PABP=PD(9.7=29.2)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTGTCTACAACGTCCACG
R:
AGGGCCTTAGAGACAAGAGCA
Band lengths:
179-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development