GgaEX1000843 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr20:5575811-5577867:-
Coord C1 exon
chr20:5577737-5577867
Coord A exon
chr20:5576909-5576998
Coord C2 exon
chr20:5575811-5576331
Length
90 bp
Sequences
Splice sites
3' ss Seq
CACATGTGCTCTCTCATCAGATT
3' ss Score
9.11
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
Exon sequences
Seq C1 exon
GTGAGCGGCTCTACCCCCTGATCCATGCAATGCACGCCTCACTGGCTGGCAAGATCACAGGCATGCTGCTGGAGATCGACAATTCAGAGCTGCTGCTTCTGCTGGAGTCCCCTGAATCCTTGCACTCCAAG
Seq A exon
ATTGAGGAAGCAGTTGCTGTTCTCCAGGCACACCAGGCCACTGAGGCGTCACACAAGGGCAGCACAGCCCCGTTCCTGCAGTGAGCCCGG
Seq C2 exon
GCTTCATGACTGAGAGTGAACCTTGAGAACGTCGCCTTTGGAGAGAGCAGCAGCAGCCGCCTCACCTCACCTTGCTTTTGGAACTGTGCCCTCACACTGACCCTAGTTTGCCTTCAATGCCCCATCCTGCCTTTTGTGTGTACTGTGTGTCTTGCAGAACCACTTCCTCCTTGCACTGCTGTAGAAGTTGATTCTCTTCTCTTCTGAAAGCACCTCATGAAATGTGATGTGGAACTCAGTCTGACTCAGTTGCCCAGGAAATGACAAGTGCAGATGAATCATCACTTCAGTGAATTTATTGGGTTCTGTAGTTTTATTTGTTCCTGTAGTTGATGCTAATAAAGAACTGATGCTTCCACTTCCGAAGCATGAGTTAGCTTTCTTTGCAGAAAGGCAGCAAATACTCTGCCTTGGTTTGTGCTGGAGGAGAGACACGTCAGCTAGCCTGCTGCAATTAGTGCTTGGAACCTGTGATGTTGGCAGGGTGATGGTCCTCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004123_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0065813=PABP=FE(59.7=100)
A:
PF0065813=PABP=PD(9.7=36.8)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTACCCCCTGATCCATGCA
R:
CTCTCCAAAGGCGACGTTCTC
Band lengths:
168-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]