BtaEX0025931 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000025400 | PARP4
Description
poly (ADP-ribose) polymerase family, member 4 [Source:HGNC Symbol;Acc:HGNC:271]
Coordinates
chr12:36718730-36723194:-
Coord C1 exon
chr12:36723125-36723194
Coord A exon
chr12:36719599-36719674
Coord C2 exon
chr12:36718730-36718843
Length
76 bp
Sequences
Splice sites
3' ss Seq
TTGTATTATACAAATTTCAGGTT
3' ss Score
6.54
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
AAATGGAAATGAATGATTCTTCATTCCTGGACAGTTCCACAGAGAAGGAGAACACTGTTGAACTCACTAA
Seq A exon
GTTTTATGCAGAGGGTGTTGAAATTCCTCATTTTCCTCAAGATTTTGAAGTTGCAAAATATAACATCTTGGAAAAA
Seq C2 exon
GTTGTGACAGAGGGAGGTAAGGAGACCGCCGTGGTGGAGCTGCAGTGCCTCCAGGGCCCTGGGGACCGTGGCTTTCTGATATGCACACACTTCCTCCTGGCCACTGGCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025400_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.417 A=0.000 C2=0.053
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCATTCCTGGACAGTTCC
R:
CAGTGGCCAGGAGGAAGTGT
Band lengths:
159-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development