MmuEX6041773 @ mm10
Exon Skipping
Gene
ENSMUSG00000054509 | Parp4
Description
poly (ADP-ribose) polymerase family, member 4 [Source:MGI Symbol;Acc:MGI:2685589]
Coordinates
chr14:56587749-56589980:+
Coord C1 exon
chr14:56587749-56587812
Coord A exon
chr14:56588419-56588494
Coord C2 exon
chr14:56589879-56589980
Length
76 bp
Sequences
Splice sites
3' ss Seq
TTTCATTATACAAATTTCAGGGT
3' ss Score
6.22
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AAGTGCAATCAGAATATCTGCCTTCAGACAACACCCCAGAGAAGGAAAACACCGAAGTCACTGA
Seq A exon
GGTTTCTGCAGAGAATGTTGAAATTCCCCCCTTTCTTCAAGACTTTGAAGTTGTGAAATATAACATCTTGGAAAAG
Seq C2 exon
GTAGGAGGCCCCGAGACTGTGGTGGTAGAGCTGCAGAGCTCCCAGGACCCAGAGAGCTGCCCCTTTGTGATAACAGCACACTTCCTCCTGGCTGATCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054509-'6-16,'6-10,9-16=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.179 C2=0.157
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCAATCAGAATATCTGCCTTCA
R:
TGATCAGCCAGGAGGAAGTGT
Band lengths:
161-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types