RnoEX0001702 @ rn6
Exon Skipping
Gene
ENSRNOG00000051196 | AABR07018038.1
Description
NA
Coordinates
chr15:36823412-36825326:+
Coord C1 exon
chr15:36823412-36823475
Coord A exon
chr15:36824060-36824135
Coord C2 exon
chr15:36825216-36825326
Length
76 bp
Sequences
Splice sites
3' ss Seq
TTGAATTATACAAATTTCAGGGT
3' ss Score
5.15
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
AAGTGCAAATAGAAGATCCGCCTTTGGACAACACCCCGGAGAAAGAAAACATCGAAGTCGTTGA
Seq A exon
GGTCTCTGCGGAGAATGTTGAAATTCCTCCCTTTCTTCAGGACTTTGAAGTTGTGAAATATAACGTCTTGAAAAAA
Seq C2 exon
ATGGGAGCAGACGGAGGCCCAGAGACGGTGGTGGTGGAGCTGCAGAGCTCCCGAGACCCGGGGAGCTCCCCCTTTGTGATAGCAGCACACTTCCTCCTGGCTGAACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051196_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.038 C2=0.216
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCAAATAGAAGATCCGCCT
R:
GTTCAGCCAGGAGGAAGTGTG
Band lengths:
169-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]