HsaEX0045614 @ hg19
Exon Skipping
Gene
ENSG00000102699 | PARP4
Description
poly (ADP-ribose) polymerase family, member 4 [Source:HGNC Symbol;Acc:271]
Coordinates
chr13:25072254-25074520:-
Coord C1 exon
chr13:25074454-25074520
Coord A exon
chr13:25073439-25073514
Coord C2 exon
chr13:25072254-25072367
Length
76 bp
Sequences
Splice sites
3' ss Seq
TTATACACTACAAATTTCAGGTT
3' ss Score
5.29
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
AAGTGAAAACAGAAGGTCTATGCCCGGACAGTGCCACAGAGGAGGAAGACACTGTGGAACTCACTGA
Seq A exon
GTTTGGTATGCAGAATGTTGAAATTCCTCATCTTCCTCAAGATTTTGAAGTTGCAAAATATAACACCTTGGAGAAA
Seq C2 exon
GTGGGAATGGAGGGAGGCCAGGAAGCTGTGGTGGTGGAGCTTCAGTGTTCGCGGGACTCCAGGGACTGTCCTTTCCTGATATCCTCACACTTCCTCCTGGATGATGGCATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102699-'4-6,'4-5,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.870 A=0.038 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGAAGGTCTATGCCCGGA
R:
TCCATGCCATCATCCAGGAGG
Band lengths:
173-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)