MmuEX6041773 @ mm9
Exon Skipping
Gene
ENSMUSG00000054509 | Parp4
Description
poly (ADP-ribose) polymerase family, member 4 [Source:MGI Symbol;Acc:MGI:2685589]
Coordinates
chr14:57206586-57208817:+
Coord C1 exon
chr14:57206586-57206649
Coord A exon
chr14:57207256-57207331
Coord C2 exon
chr14:57208716-57208817
Length
76 bp
Sequences
Splice sites
3' ss Seq
TTTCATTATACAAATTTCAGGGT
3' ss Score
6.22
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AAGTGCAATCAGAATATCTGCCTTCAGACAACACCCCAGAGAAGGAAAACACCGAAGTCACTGA
Seq A exon
GGTTTCTGCAGAGAATGTTGAAATTCCCCCCTTTCTTCAAGACTTTGAAGTTGTGAAATATAACATCTTGGAAAAG
Seq C2 exon
GTAGGAGGCCCCGAGACTGTGGTGGTAGAGCTGCAGAGCTCCCAGGACCCAGAGAGCTGCCCCTTTGTGATAACAGCACACTTCCTCCTGGCTGATCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054509-'4-7,'4-5,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.192 C2=0.147
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCAATCAGAATATCTGCCTTCA
R:
TGATCAGCCAGGAGGAAGTGT
Band lengths:
161-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: