BtaEX0026308 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007758 | PDE10A
Description
phosphodiesterase 10A [Source:HGNC Symbol;Acc:HGNC:8772]
Coordinates
chr9:102037102-102039599:-
Coord C1 exon
chr9:102039457-102039599
Coord A exon
chr9:102039180-102039330
Coord C2 exon
chr9:102037102-102037194
Length
151 bp
Sequences
Splice sites
3' ss Seq
TGTGATATCATTCCCACCAGGAC
3' ss Score
8.74
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
ATATATGCAAAAAACCTGGTGAATGCCGACCGTTGTGCCCTTTTCCAGGTAGACCATAAGAACAAGGAGTTATATTCAGACCTTTTTGATATTGGAGAGGAAAAGGAAGGAAAGCCCGTCTTCAAGAAGACCAAGGAGATCAG
Seq A exon
GACCCGCCTCCTGAAGGTAGTGCTTGTGGGCATGACATTGCAGTGCCAGCGAAACCGCGCCTAGGAAGCTTTAGCACCACTCCTGGAAATGCCGTCTTCCGGAGGCGGTCCTTTTGGAAATCATGTTGGAAAAAGTTACTAGTGCTCCCAG
Seq C2 exon
GTTTTCAATCGAGAAGGGGATCGCTGGCCAGGTAGCAAGGACCGGGGAAGTTCTGAACATCCCAGATGCCTATGCAGACCCGCGCTTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007758_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(32.0=100)
A:
NO
C2:
PF0159021=GAF=FE(21.1=100)
Main Inclusion Isoform:
ENSBTAT00000010204fB5083
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACCTGGTGAATGCCGACC
R:
CTGTTGAAGCGCGGGTCTG
Band lengths:
226-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development