GgaEX0017356 @ galGal3
Exon Skipping
Gene
ENSGALG00000011537 | PDE10A
Description
NA
Coordinates
chr3:45168423-45170741:+
Coord C1 exon
chr3:45168423-45168565
Coord A exon
chr3:45168697-45168848
Coord C2 exon
chr3:45170649-45170741
Length
152 bp
Sequences
Splice sites
3' ss Seq
TGTGATATCATTCCCACCAGGAC
3' ss Score
8.74
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
ATATATGCAAAAAACCTGGTGAATGCAGATAGGTGTGCACTCTTCCAGGTTGACCACAAAAATAAGGAGCTGTATTCAGATCTTTTTGATATTGGAGAAGAAAATGATGGAAAACCTGTTTTTAAGAAGACCAAAGAAATAAG
Seq A exon
GACCCGCCTCCAGAAGGTAGTACTTCTGGGAATGACATTGCAGTGCCATCGAAACAACGCCTCTGAAGCTATAACGTCACTCCTGGAAATGCCGTCTTCCGGAGGCGGTCCTTTTGGAAATCATGTTGGGAAAAAAACAGAGGTGTTCTGAG
Seq C2 exon
ATTTTCTATAGAAAAAGGAATAGCTGGTCAAGTGGCAAGAACCGGGGAAGTCCTTAACATCCCTGATGCCTATGCAGATCCACGCTTTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011537-'10-10,'10-9,11-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(32.0=100)
A:
NO
C2:
PF0159021=GAF=FE(21.1=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACCTGGTGAATGCAGATAGGT
R:
CTGTTAAAGCGTGGATCTGCA
Band lengths:
226-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]