BtaEX0026372 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012945 | PDE6A
Description
phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:HGNC Symbol;Acc:HGNC:8785]
Coordinates
chr7:63219463-63224366:-
Coord C1 exon
chr7:63224217-63224366
Coord A exon
chr7:63223511-63223654
Coord C2 exon
chr7:63219463-63219528
Length
144 bp
Sequences
Splice sites
3' ss Seq
CTTCCTTTCTTTCCTTTCAGTCT
3' ss Score
12.27
5' ss Seq
TTGGTGGGT
5' ss Score
4.3
Exon sequences
Seq C1 exon
AAAGAGCCTCTGGATGAGTCTGGATGGGTGATTAAAAATGTCCTTTCTATGCCAATTGTGAACAAGAAGGAGGAAATTGTTGGGGTGGCCACGTTTTACAATCGCAAAGATGGAAAACCCTTTGATGAAATGGATGAGACCCTCATGGAG
Seq A exon
TCTTTGGCCCAGTTCCTGGGCTGGTCTGTCTTAAATCCTGACACTTATGAGTTGATGAACAAACTTGAAAACAGGAAGGATATTTTCCAAGACATGGTGAAATACCACGTGAAGTGTGACAATGAAGAAATCCAGACAATCTTG
Seq C2 exon
AAAACCAGAGAGGTGTATGGGAAGGAGCCGTGGGAATGCGAGGAAGAAGAACTGGCTGAGATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012945-'9-10,'9-9,10-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(27.5=100)
A:
PF0159021=GAF=PD(5.1=18.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCCTCTGGATGAGTCTGG
R:
GGATCTCAGCCAGTTCTTCTTCC
Band lengths:
212-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development