RnoEX0064369 @ rn6
Exon Skipping
Gene
ENSRNOG00000017816 | Pde6a
Description
phosphodiesterase 6A [Source:RGD Symbol;Acc:1306835]
Coordinates
chr18:56580935-56585489:+
Coord C1 exon
chr18:56580935-56581084
Coord A exon
chr18:56581489-56581632
Coord C2 exon
chr18:56585424-56585489
Length
144 bp
Sequences
Splice sites
3' ss Seq
AACTCGTTCTTTCTCTACAGTCT
3' ss Score
8.85
5' ss Seq
TTGGTGGGT
5' ss Score
4.3
Exon sequences
Seq C1 exon
AAAGAGCCTCTGGATGAATCTGGATGGATGATTAAAAACGTACTCTCCATGCCGATTGTCAACAAGAAGGAAGAGATCGTGGGCGTGGCCACATTTTACAATCGCAAAGATGGGAAGCCCTTCGACGACATGGACGAGACCCTTATGGAG
Seq A exon
TCTTTGACTCAGTTTCTGGGCTGGTCAGTCTTAAACCCTGACACCTACGAGTCCATGAACAAACTTGAGAACAGGAAGGATATCTTCCAGGACATCGTAAAATATCACGTCAAGTGTGATAATGAGGAAATTCAGAAGATCTTG
Seq C2 exon
AAAACCAGAGAGGTGTATGGCAAAGAGCCGTGGGAATGCGAGGAGGAGGAGCTGGCTGAGATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017816-'8-10,'8-9,9-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(27.5=100)
A:
PF0159021=GAF=PD(5.1=18.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCCTCTGGATGAATCTGGA
R:
GATCTCAGCCAGCTCCTCCTC
Band lengths:
211-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]