GgaEX6050546 @ galGal4
Exon Skipping
Gene
ENSGALG00000015373 | PDE6B
Description
Phosphodiesterase 6b subunit [Source:UniProtKB/TrEMBL;Acc:F1NA42]
Coordinates
chrZ:53323718-53325676:-
Coord C1 exon
chrZ:53325527-53325676
Coord A exon
chrZ:53324411-53324554
Coord C2 exon
chrZ:53323718-53323783
Length
144 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTCCTCCTCTCCAAGTCC
3' ss Score
6.35
5' ss Seq
CTGGTAATG
5' ss Score
5.67
Exon sequences
Seq C1 exon
GAAGGTCCTCTAGACGAATCAGGATGGACTATCAAAAATGTTCTCTCCATGCCAATAGTCAACAAAAAGGAAGAAATTGTTGGCGTTGTCACATTTTTTAACAGAAAAGATGGGAAACCATTTGATGAACAGGATGAGACCCTGATGGAG
Seq A exon
TCCCTGACACAGTTTCTGGGCTGGTCTGTACTCAACACAGATACGTATGATAAGATGAACAAACTGGAGAACCGGAAAGATATTGCCCAGGATATGGTGCTCTACCACGTGAAGTGTGACAAGGATGAAATTCAGGAAATTCTG
Seq C2 exon
CCAACACGAGAAAAGCTGGGGAAGGAGCCAAGTGAGTGTGAGGAAGAGGAGCTGGCAAGTATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015373-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.182
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(27.5=100)
A:
PF0159021=GAF=PD(5.1=18.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTCTAGACGAATCAGGATGGA
R:
GGATACTTGCCAGCTCCTCTT
Band lengths:
210-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]