DreEX0054321 @ danRer10
Exon Skipping
Gene
ENSDARG00000000380 | pde6a
Description
phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:ZFIN;Acc:ZDB-GENE-030616-42]
Coordinates
chr14:24726973-24729533:-
Coord C1 exon
chr14:24729384-24729533
Coord A exon
chr14:24727273-24727416
Coord C2 exon
chr14:24726973-24727038
Length
144 bp
Sequences
Splice sites
3' ss Seq
CGAATCCTTATTTATTTCAGTCT
3' ss Score
5.07
5' ss Seq
TTGGTGGGT
5' ss Score
4.3
Exon sequences
Seq C1 exon
AAAGAACCTCTGGATGAATCTGGATGGATGATAAAGAATGTGCTCTCCTTGCCTATCGTGAACAAGAAAGAGGAAATCGTTGGCGTGGCCACGTTCTATAACAGGAAAGATGGAAAGCCTTTCGATGAAATGGACGAAACGCTAATGGAG
Seq A exon
TCTCTCACTCAGTTCCTGGGATGGTCAGTGCTGAATACAGACACATACGATAAGATGAACAAGCTAGAAAATCGTAAGGACATCTTTCAGGACATGGTCATGTACCACGTCAAATGCAGGAAGGATGAGATTCAGAATATCTTG
Seq C2 exon
AACACACGTGAGATGTATGATAAAGAGCCTGACGAATGTGAAGAGGACGAGCTGGAAGATATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000380_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.136
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(27.5=100)
A:
PF0159021=GAF=PD(5.1=18.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAACCTCTGGATGAATCTGGA
R:
ATCTTCCAGCTCGTCCTCTTCA
Band lengths:
210-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]