RnoEX0064373 @ rn6
Exon Skipping
Gene
ENSRNOG00000000065 | Pde6b
Description
phosphodiesterase 6B [Source:RGD Symbol;Acc:1311039]
Coordinates
chr14:2336297-2337580:-
Coord C1 exon
chr14:2337431-2337580
Coord A exon
chr14:2337006-2337121
Coord C2 exon
chr14:2336297-2336362
Length
116 bp
Sequences
Splice sites
3' ss Seq
ACAGTTCCTGGGATGGTCAGTGT
3' ss Score
-0.47
5' ss Seq
TTGGTAACT
5' ss Score
4.27
Exon sequences
Seq C1 exon
GAAGGGCCCCTGGATGAGTCAGGGTGGGTGATCAAGAATGTTCTCTCCATGCCCATTGTCAACAAGAAGGAGGAGATTGTGGGGGTAGCCACCTTCTACAACAGGAAAGATGGAAAGCCCTTCGATGATCAAGATGAAGTCCTTATGGAG
Seq A exon
TGTTGAACACAGACACCTATGACAAGATGAACAAGCTGGAGAACCGTAAGGACATCGCCCAGGACATGGTTCTGTACCATGTGAGATGCGACAAGGATGAAATCCAGGAAATCTTG
Seq C2 exon
CCAACAAGGGATCGCCTGGGGAAGGAACCTGCTGACTGTGAGGAGGATGAGCTGGGGAAAATCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000065-'10-13,'10-12,11-13
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.136
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(27.5=100)
A:
PF0159021=GAF=PD(5.1=18.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGGCCCCTGGATGAGTC
R:
TTTTCCCCAGCTCATCCTCCT
Band lengths:
211-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]