BtaEX6032569 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017480 | PDE6B
Description
phosphodiesterase 6B, cGMP-specific, rod, beta [Source:HGNC Symbol;Acc:HGNC:8786]
Coordinates
chr6:108841307-108842088:+
Coord C1 exon
chr6:108841307-108841453
Coord A exon
chr6:108841561-108841704
Coord C2 exon
chr6:108842023-108842088
Length
144 bp
Sequences
Splice sites
3' ss Seq
GGGGTGACGTGCGCCTGCAGTCT
3' ss Score
3.85
5' ss Seq
CTGGTGCGT
5' ss Score
8.29
Exon sequences
Seq C1 exon
GAGGGGCCTCTGGACGACTCTGGGTGGATCGTCAAGAACGTCCTCTCCATGCCCATCGTCAACAAGAAGGAGATCGTGGGGGTCGCGACATTTTACAACAGGAAGGACGGGAAGCCCTTCGATGAGCAGGATGAAGTCCTGATGGAG
Seq A exon
TCTCTCACACAGTTCCTGGGCTGGTCGGTGCTGAACACTGACACCTACGACAAGATGAACAAGCTGGAGAACCGCAAGGACATCGCCCAAGACATGGTCCTGTACCACGTGAGATGTGACAGAGAGGAAATCCAGCTGATCCTG
Seq C2 exon
CCAACCAGAGAACGCCTCGGGAAGGAGCCTGCCGACTGCGAGGAGGACGAGCTGGGGAAAATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017480-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.091
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(27.1=100)
A:
PF0159021=GAF=PD(5.1=18.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCCTCTGGACGACTCTG
R:
CAGGATTTTCCCCAGCTCGTC
Band lengths:
210-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]