MmuEX0034188 @ mm9
Exon Skipping
Gene
ENSMUSG00000029491 | Pde6b
Description
phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide [Source:MGI Symbol;Acc:MGI:97525]
Coordinates
chr5:108852027-108853381:+
Coord C1 exon
chr5:108852027-108852176
Coord A exon
chr5:108852459-108852602
Coord C2 exon
chr5:108853316-108853381
Length
144 bp
Sequences
Splice sites
3' ss Seq
ACACTCCTGTCTACCTCCAGTCT
3' ss Score
8.61
5' ss Seq
CTGGTACTG
5' ss Score
4.41
Exon sequences
Seq C1 exon
GAGGGGCCCCTGGATGATTCAGGATGGGTGATCAAGAATGTCCTCTCTATGCCCATTGTCAACAAGAAAGAGGAGATTGTGGGGGTGGCAACCTTCTACAACAGGAAAGATGGAAAGCCCTTCGATGATCAAGATGAAGTCCTTATGGAG
Seq A exon
TCTCTGACACAGTTCCTGGGGTGGTCAGTGCTGAACACAGACACCTATGACAAGATGAACAAGCTGGAGAACCGTAAGGACATCGCCCAGGACATGGTTCTGTACCATGTGAGATGTGACAAAGATGAAATCCAGGAAATCCTG
Seq C2 exon
CCAACAAGGGATCGCCTTGGGAAAGAGCCTGCTGACTGTGAGGAGGATGAGCTGGGGAAAATCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029491-'8-9,'8-8,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.136
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(27.5=100)
A:
PF0159021=GAF=PD(5.1=18.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGGCCCCTGGATGATTC
R:
TTTTCCCCAGCTCATCCTCCT
Band lengths:
210-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: