DreEX6084140 @ danRer10
Exon Skipping
Gene
ENSDARG00000011671 | pde6b
Description
phosphodiesterase 6B, cGMP-specific, rod, beta [Source:ZFIN;Acc:ZDB-GENE-090421-2]
Coordinates
chr21:20326727-20330472:+
Coord C1 exon
chr21:20326727-20326876
Coord A exon
chr21:20330171-20330314
Coord C2 exon
chr21:20330407-20330472
Length
144 bp
Sequences
Splice sites
3' ss Seq
CTGTGCTATTGTCTTGACAGGCT
3' ss Score
8.94
5' ss Seq
CTCGTATGT
5' ss Score
5.29
Exon sequences
Seq C1 exon
ACAGAGGCTCTGGATGATAGTGGATGGACCATCAAGAATGTGCTCTCCTTGCCAATTGTCAACAAAAAAGAAGAAATTGTTGGCGTTGCAACTTTCTACAACAGGAAGGATGGCAAACCATTTGATGAACATGATGAGCAACTTATGGAG
Seq A exon
GCTTTGACACAGTTTTTAGGCTGGTCGGCTCTCAACACAGACACCTACGACAAAATGAATAAACTGGAGAACAGGAAAGATATTGCCCAGGACATGGTGCTGTACCATGTCAAATGTCGAGATGATGAGATCCAAGATATCCTC
Seq C2 exon
AAAACAAGAGAATATTTTGACAGGGAGCCAAGGGACTGCGAGGAGGAGGAGCTTTTGGAGATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011671-'8-11,'8-10,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(27.7=100)
A:
PF0159021=GAF=PD(4.5=16.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGGCTCTGGATGATAGTGGA
R:
TCTCCAAAAGCTCCTCCTCCT
Band lengths:
210-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]